PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g07650.1
Common NameLR48_Vigan07g085100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 728aa    MW: 80763.3 Da    PI: 7.8631
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g07650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.2e-19318418199
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk++ae++   +++ e+  l ++d +g++W++++++  +++s++yvl+ G     +a +L++gD+v+F++++  +++
  Vang01g07650.1 318 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLHMKDVKGNEWTFQFRFwpNNNSRMYVLE-GVTPCIQALQLNAGDIVIFSRID-PGGK 410
                     99**************************555556677***************9989999999***9.********************987.7777 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     +v++++r+
  Vang01g07650.1 411 FVLGFRRA 418
                     79999886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-20315417IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-30315422IPR015300DNA-binding pseudobarrel domain
CDDcd100175.06E-24316417No hitNo description
PfamPF023624.2E-16318418IPR003340B3 DNA binding domain
SMARTSM010191.5E-23318419IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856318419IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    Send to blast
MELDVCMNGA CKNGYAREWK KGWPLRSGGF ARLCDKCGSA YANSIFCEKF HLHQTGWREC  60
NFCNKSIHCG CIISRFSFEY LDFGGIGCST CLRASPFPLI QETGNSIRSI RSVKNHASDR  120
HTEHIDDRLF LDGSSKRKPM HMRRIVDGRE SSRWPQVKRD DIHSCIDLSR EEMRFSNVMK  180
PSNHSLKFTA LENNRPTWEN RSMHRSSSLN ISLGASSGNP VLPSASAVAA EGRFDGKTSS  240
SSFHQGQRSL SIMPKPLMNA ININMESSNG MISQERVARP PTDGKGKNML LSRYWPRITD  300
QELQQLSGDL KSTIVPLFEK VLSASDAGRI GRLVLPKSCA EAYFPPISQS EGLPLHMKDV  360
KGNEWTFQFR FWPNNNSRMY VLEGVTPCIQ ALQLNAGDIV IFSRIDPGGK FVLGFRRASD  420
STDTQVVTLF SISLSVDASA AHSNVLSTKE TTFSGATAGN SYHDLLQTRK GNGDPYLNKC  480
SEHFRLGTAG IAERLRTENS EIVNKDLVQL PISVSEKTQN IGPMCKRLLI HNEDAMELRV  540
TWEEAQDLLC PAPSIKSNIV TVEDQEFEEY EEPPVFGKRT TINARSSGSL SFASEEMSPK  600
ELDNIPVIRK GVLEDDVADR GDSSAGATTK YPRHRSGCTC IVCIQASSGK GRHSPPCITV  660
ERRLDTLLTR KKQRLGTQKD EDEGDGACLS EKEGNINKGC LKKGELSAGQ IDLNCRPNLD  720
EDMQVDI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1331740413102DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503048.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like
TrEMBLA0A0L9UX490.0A0A0L9UX49_PHAAN; Uncharacterized protein
STRINGGLYMA14G38492.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15634911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-156HSI2-like 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]